|
enrich_1D()
|
1D enrichment analysis calculated with enrichR |
|
evidence.raw
|
evidence file from MaxQuant of a TMT experiment of MDA-MB231 cell
protrusions and bodies during a timecourse experiment. |
|
filter_MaxQuant()
|
Filter proteinGroups table by rows |
|
make_TMT_se()
|
Data.frame to SummarizedExperiment object
conversion using file information and user input |
|
make_unique()
|
Make unique name identifiers for proteins |
|
peptides.raw
|
peptides file from MaxQuant of a TMT experiment of MDA-MB231 cell
protrusions and bodies during a timecourse experiment. |
|
plot_labelingefficiency()
|
Plot TMT labeling efficiency |
|
plot_miscleavagerate()
|
Plot protease misscleavage rate |
|
plot_scatter()
|
Plot log2 protrusion/cell-bodies distribution across two biological conditions |
|
prot.raw
|
proteinGroups file from MaxQuant of a TMT experiment of MDA-MB231 cell
protrusions and bodies during a timecourse experiment. |