Filter proteinGroups table by rows

filter_MaxQuant imports a proteinGroups table from MaxQuant and filter rows with a '+' on columns to filter provided by user.

filter_MaxQuant(proteins, tofilter)

Arguments

proteins	Data.frame, Protein table originating from MaxQuant.
tofilter	Character, Name of the column(s) containing features to be filtered on.

Value

dataframe

Examples

if(interactive()){
proteins_filtered <- filter_MaxQuant(prot.raw,
tofilter= c("Reverse" , "Potential.contaminant" ,"Only.identified.by.site"))

}