Plot log2 protrusion/cell-bodies distribution across two biological conditions

plot_scatter generates a scatterplot for two conditions of interest highlighting a given category of interest.

plot_scatter(se, xpos, ypos, category, color_highlight, xlimit, ylimit)

Arguments

se

SummarizedExperiment, Data object containing processed proteomics data
xpos

Integer, Timepoint to represent on the x axis on the scatterplot
ypos

Integer, Timepoint to represent on the y axis on the scatterplot
category

Character, Sets the proteins to highlight in the plot
color_highlight

Character, Sets the color of category to highlight in the plot
xlimit

Character, Sets the limit of x axis on the scatterplot
ylimit

Character, Sets the limit of y axis on the scatterplot

Value

A scatter plot (generated by ggplot)

Examples

if(interactive()){
plot_scatter(se, 1, 2, "HIST", 'orange', 4, 4)
}